About

paplot is a suite of programs to create various dynamic and interactive reports for cancer genome analysis.

Available reports

1. Quality Control (QC) Report

QC Reports present the qualities of each sequence data (sequencing coverage, alignment ratio, insert sizes, etc.).

2. Chromosomal Aberration (CA) Report

CA Reports present the sample-wise landscape of chromosomal aberrations (e.g., structural variations and gene fusion).

3. Mutation Matrix Report

Mutation Matrix Reports present the mutation status of each gene (vertical axis) and sample (horizontal axis).

4. Mutational Signature Report

Mutational Signature Reports present the mutation signatures identified in the cohort and contribution ratios of signatures per sample.

Representation by pmsignature is also possible.